Bogaerts will get a planned day off in the series finale against the Athletics with the Red Sox going for a three-game sweep.
Tzu-Wei Lin will start at shortstop in his place, while Michael Chavis will play second base, as the Red Sox up go against A's right-hander Mike Fiers.
Christian Vazquez will catch Red Sox starter Hector Velazquez.
Here's the complete Red Sox lineup.
Andrew Benintendi, LF
Mookie Betts, RF
J.D. Martinez, DH
Rafael Devers, 3B
Michael Chavis, 2B
Mitch Moreland, 1B
Christian Vazquez, C
Jackie Bradley Jr., CF
Tzu-Wei Lin, SS
Hector Velazquez, RHP